Gene detail

Detailed information of OS493_013106-T1 in Lophelia pertusa

Genomic Location: scaffold_35:391659...396641
NR annotation: KAJ7362018.1, ER lumen protein-retaining receptor 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33947	ER lumen protein-retaining receptor 2 OS=Homo sapiens OX=9606 GN=KDELR2 PE=1 SV=1
Q5ZKX9	ER lumen protein-retaining receptor 2 OS=Gallus gallus OX=9031 GN=KDELR2 PE=1 SV=1
Q2KJ37	ER lumen protein-retaining receptor 2 OS=Bos taurus OX=9913 GN=KDELR2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005839 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00810 all species →	ER_lumen_recept	ER lumen protein retaining receptor	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000133 all species →	Family	ER lumen protein retaining receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10585 all species →	ER LUMEN PROTEIN RETAINING RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006621 all species →	Biological Process	protein retention in ER lumen	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046923 all species →	Molecular Function	ER retention sequence binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005801 all species →	Cellular Component	cis-Golgi network	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10949	KDELR; ER lumen protein retaining receptor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013106-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

114.8Max TPM

50.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	37.05	69.81
polyp at pH7 6	18	18	44.49	80.91
coral polyp · control treatment	16	16	62.42	104.42
coral polyp · oil and dispersant treatment	16	16	67.25	114.76
coral polyp · oil treatment	16	16	50.23	97.28
coral polyp · dispersant treatment	16	16	54.33	89.42
Polyp	10	10	33.80	79.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.81
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	104.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.24
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.80
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.59
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.10
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	79.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	51.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	45.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	33.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.48

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.