Gene detail

Detailed information of OS493_013107-T1 in Lophelia pertusa

Genomic Location: scaffold_35:401358...410697
NR annotation: KAJ7362019.1, hypothetical protein OS493_013107 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86WA9	Sodium-independent sulfate anion transporter OS=Homo sapiens OX=9606 GN=SLC26A11 PE=1 SV=2
Q80ZD3	Sodium-independent sulfate anion transporter OS=Mus musculus OX=10090 GN=Slc26a11 PE=1 SV=2
G3C7W6	Sodium-independent sulfate anion transporter OS=Cavia porcellus OX=10141 GN=Slc26a11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001493 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00916 all species →	Sulfate_transp	Sulfate permease family	Family	Interproscan
PF01740 all species →	STAS	STAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036513 all species →	Homologous_superfamily	STAS domain superfamily	Interproscan
IPR011547 all species →	Domain	SLC26A/SulP transporter domain	Interproscan
IPR001902 all species →	Family	SLC26A/SulP transporter	Interproscan
IPR002645 all species →	Domain	STAS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11814 all species →	SULFATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015116 all species →	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14708	SLC26A11; solute carrier family 26 (sodium-independent sulfate anion transporter), member 11	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013107-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

64.9Max TPM

16.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.78	21.90
polyp at pH7 6	18	18	14.51	19.13
coral polyp · control treatment	16	16	22.86	41.86
coral polyp · oil and dispersant treatment	16	16	17.51	28.37
coral polyp · oil treatment	16	16	21.57	64.92
coral polyp · dispersant treatment	16	16	13.87	36.05
Polyp	10	10	9.22	13.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.46
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.15
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.42
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.25
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.28
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.