Gene detail

Detailed information of OS493_013109-T1 in Lophelia pertusa

Genomic Location: scaffold_35:425239...426254
NR annotation: KAJ7362021.1, Diphthine methyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CYU6	Diphthine methyltransferase OS=Mus musculus OX=10090 GN=Dph7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005400 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_013109-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR052415 all species →	Family	Diphthine methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46042 all species →	DIPHTHINE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017183 all species →	Biological Process	protein histidyl modification to diphthamide	Interproscan
GO:0061685 all species →	Molecular Function	diphthine methylesterase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013109-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013109-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

15.8Max TPM

5.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.25	15.80
polyp at pH7 6	18	16	7.28	13.75
coral polyp · control treatment	16	16	4.80	8.44
coral polyp · oil and dispersant treatment	16	15	2.87	7.20
coral polyp · oil treatment	16	16	5.37	8.39
coral polyp · dispersant treatment	16	16	2.66	4.11
Polyp	10	10	8.13	15.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.75
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.