Gene detail

Detailed information of OS493_013125-T1 in Lophelia pertusa

Genomic Location: scaffold_35:523207...524922
NR annotation: KAJ7362037.1, glycosylceramidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09849	Lactase/phlorizin hydrolase OS=Oryctolagus cuniculus OX=9986 GN=LCT PE=1 SV=1
P09848	Lactase/phlorizin hydrolase OS=Homo sapiens OX=9606 GN=LCT PE=1 SV=3
W5PLZ6	Lactase/phlorizin hydrolase OS=Ovis aries OX=9940 GN=LCT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00232 all species →	Glyco_hydro_1	Glycosyl hydrolase family 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR001360 all species →	Family	Glycoside hydrolase family 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10353 all species →	GLYCOSYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008422 all species →	Molecular Function	beta-glucosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013125-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013125-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

26.0Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	9.91	16.94
polyp at pH7 6	18	17	10.05	23.23
coral polyp · control treatment	16	16	10.54	15.36
coral polyp · oil and dispersant treatment	16	16	9.18	17.89
coral polyp · oil treatment	16	16	11.47	25.99
coral polyp · dispersant treatment	16	16	7.06	20.37
Polyp	10	9	7.91	18.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.23
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.35
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.