Gene detail

Detailed information of OS493_013126-T1 in Lophelia pertusa

Genomic Location: scaffold_35:525026...525599
NR annotation: KAJ7362038.1, hypothetical protein OS493_013126 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
W5PLZ6	Lactase/phlorizin hydrolase OS=Ovis aries OX=9940 GN=LCT PE=1 SV=1
Q03506	Beta-glucosidase OS=Niallia circulans OX=1397 GN=bglA PE=1 SV=3
P09849	Lactase/phlorizin hydrolase OS=Oryctolagus cuniculus OX=9986 GN=LCT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00232 all species →	Glyco_hydro_1	Glycosyl hydrolase family 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001360 all species →	Family	Glycoside hydrolase family 1	Interproscan
IPR033132 all species →	Conserved_site	Glycosyl hydrolases family 1, N-terminal conserved site	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10353 all species →	GLYCOSYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008422 all species →	Molecular Function	beta-glucosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013126-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013126-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

11.7Max TPM

4.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.44	9.57
polyp at pH7 6	18	17	5.04	8.43
coral polyp · control treatment	16	16	5.29	11.68
coral polyp · oil and dispersant treatment	16	14	3.58	11.64
coral polyp · oil treatment	16	16	5.03	10.75
coral polyp · dispersant treatment	16	13	3.56	9.18
Polyp	10	8	2.23	5.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.