Gene detail

Detailed information of OS493_013139-T1 in Lophelia pertusa

Genomic Location: scaffold_35:594194...597964
NR annotation: KAJ7362051.1, hypothetical protein OS493_013139 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010817 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10407 all species →	Cytokin_check_N	Cdc14 phosphatase binding protein N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018844 all species →	Domain	Nucleolar protein Dnt1-like, N-terminal	Interproscan

PANTHER

No PANTHER signature was detected for OS493_013139-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_013139-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013139-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013139-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

110.2Max TPM

36.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	46.07	74.12
polyp at pH7 6	18	18	53.13	110.17
coral polyp · control treatment	16	16	37.62	63.17
coral polyp · oil and dispersant treatment	16	16	28.65	50.30
coral polyp · oil treatment	16	16	37.45	63.25
coral polyp · dispersant treatment	16	16	17.89	42.51
Polyp	10	10	33.19	78.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.26
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.87
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.92
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.25
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.54
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.35
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.67
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.07
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	78.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	43.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	42.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.64

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.