Gene detail

Detailed information of OS493_013144-T1 in Lophelia pertusa

Genomic Location: scaffold_35:633860...635627
NR annotation: KAJ7362055.1, hypothetical protein OS493_013144 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0S6U7	GTPase Era, mitochondrial OS=Danio rerio OX=7955 GN=eral1 PE=2 SV=1
B5X2B8	GTPase Era, mitochondrial OS=Salmo salar OX=8030 GN=eral1 PE=2 SV=1
D2GU20	GTPase Era, mitochondrial OS=Ailuropoda melanoleuca OX=9646 GN=ERAL1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007852 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926 all species →	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030388 all species →	Domain	Era-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR015946 all species →	Homologous_superfamily	K homology domain-like, alpha/beta	Interproscan
IPR006073 all species →	Domain	GTP binding domain	Interproscan
IPR009019 all species →	Homologous_superfamily	K homology domain superfamily, prokaryotic type	Interproscan
IPR005662 all species →	Family	GTPase Era	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42698 all species →	GTPASE ERA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03595	era, ERAL1; GTPase	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013144-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

25.4Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.20	6.61
polyp at pH7 6	18	18	3.97	5.66
coral polyp · control treatment	16	16	3.71	13.94
coral polyp · oil and dispersant treatment	16	16	3.02	25.39
coral polyp · oil treatment	16	16	3.29	7.14
coral polyp · dispersant treatment	16	15	0.90	2.22
Polyp	10	10	3.18	6.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.29
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.60
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.79

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.