Gene detail

Detailed information of OS493_013155-T1 in Lophelia pertusa

Genomic Location: scaffold_35:700206...705803
NR annotation: KAJ7362066.1, hypothetical protein OS493_013155 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42620	Glutathionyl-hydroquinone reductase YqjG OS=Escherichia coli (strain K12) OX=83333 GN=yqjG PE=1 SV=1
Q8KN33	Glutathionyl-hydroquinone reductase PcpF OS=Sphingobium chlorophenolicum OX=46429 GN=pcpF PE=1 SV=1
O94524	Glutathione S-transferase omega-like 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gto2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002339 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13410 all species →	GST_C_2	Glutathione S-transferase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047047 all species →	Domain	Glutathione S-transferases Omega-like, C-terminal	Interproscan
IPR016639 all species →	Family	Glutathione S-transferase Omega/GSH	Interproscan
IPR010987 all species →	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32419 all species →	GLUTATHIONYL-HYDROQUINONE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004364 all species →	Molecular Function	glutathione transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013155-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013155-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

188.0Max TPM

66.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.78	67.81
polyp at pH7 6	18	18	50.02	82.31
coral polyp · control treatment	16	16	71.90	120.97
coral polyp · oil and dispersant treatment	16	16	123.57	188.05
coral polyp · oil treatment	16	16	68.37	133.87
coral polyp · dispersant treatment	16	16	54.74	106.65
Polyp	10	10	49.90	81.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.48
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.18
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.03
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.33
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.93
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	101.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	188.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	184.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	81.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	79.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	65.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	54.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	53.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	46.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	39.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.