Gene detail

Detailed information of OS493_013163-T1 in Lophelia pertusa

Genomic Location: scaffold_35:730732...746404
NR annotation: KAJ7362074.1, ERI1 exoribonuclease 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZL1	ERI1 exoribonuclease 2 OS=Xenopus laevis OX=8355 GN=eri2 PE=2 SV=1
Q5BKS4	ERI1 exoribonuclease 2 OS=Mus musculus OX=10090 GN=Eri2 PE=2 SV=1
A8K979	ERI1 exoribonuclease 2 OS=Homo sapiens OX=9606 GN=ERI2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001739 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00929 all species →	RNase_T	Exonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047201 all species →	Domain	ERI-1-like, DEDDh 3'-5' exonuclease domain	Interproscan
IPR051274 all species →	Family	3'-5' Exoribonuclease	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013520 all species →	Domain	Exonuclease, RNase T/DNA polymerase III	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23044 all species →	3'-5' EXONUCLEASE ERI1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18417	ERI2; ERI1 exoribonuclease 2	EC:3.1.-.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013163-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

3.1Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	1.24	2.71
polyp at pH7 6	18	16	1.52	3.11
coral polyp · control treatment	16	16	1.13	3.04
coral polyp · oil and dispersant treatment	16	16	0.86	2.86
coral polyp · oil treatment	16	14	0.94	1.97
coral polyp · dispersant treatment	16	14	0.64	1.84
Polyp	10	7	0.76	2.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.21
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.