Gene detail

Detailed information of OS493_013194-T1 in Lophelia pertusa

Genomic Location: scaffold_35:1089665...1092818
NR annotation: KAJ7362103.1, Exportin-6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96QU8	Exportin-6 OS=Homo sapiens OX=9606 GN=XPO6 PE=1 SV=1
Q53I77	Exportin-6-A OS=Xenopus laevis OX=8355 GN=xpo6-a PE=1 SV=1
Q924Z6	Exportin-6 OS=Mus musculus OX=10090 GN=Xpo6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005441 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_013194-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040016 all species →	Family	Exportin-6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21452 all species →	EXPORTIN-6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013194-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013194-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

89.2Max TPM

31.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.26	52.06
polyp at pH7 6	18	18	30.23	56.05
coral polyp · control treatment	16	16	33.31	64.59
coral polyp · oil and dispersant treatment	16	16	32.31	56.85
coral polyp · oil treatment	16	16	34.42	70.97
coral polyp · dispersant treatment	16	16	22.75	38.68
Polyp	10	10	41.74	89.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.14
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.94
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.37
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.86
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	89.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	71.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	53.36
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	52.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	30.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.64

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.