Gene detail

Detailed information of OS493_013210-T1 in Lophelia pertusa

Genomic Location: scaffold_35:1217135...1237145
NR annotation: KAJ7362119.1, Putative RNA-binding protein Luc7-like 1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_013210-T1

ATGGCTGGTTCGGATAAAGAAAGGTTTGGCGGTGCTGCCTTAGCCACAGGCATCAGTTTTATAGCCATCTCCGTTTCTATAGCCTGCCTCGTGCACGTTTTCTTCCTGGCTTCGCCAAACGCACAATGCAGCTGCCCTCAGAATGGAAAGCCAGATGAATCGCAGAATACAACGGCAGAAATAGCAAAGCGGAAGACGATTCAAGCTGCGACAAAGGAGAAAATCAGGATAAAGATGCGAGAAGATGCAGACACAACTCTTGGGCAAACGATTGGGGAACGGAACGTGAGAAAGCGCAGACAGTCTTCGAATCAAGGACAGCAAGTCAATGGTAACACGGCTTTTGGGGGATATCTGCACAACGCCATCTTACGGCTACAACAGCAAATGATCACAGTGGAGGGCAGAACTCAATACTTACAGGACCAGTACACAAGGAAACAGAATCAGCAAGCGCCGCGCGGACCTCCGGGTAATCCAGGAATGCCGGGTAGAGACGGCAGTGACGGGAGATCTGGAATGGACGGTCCGATGGGGCACCCCGGCAGAGATGGACCCCAGGGGAAAGATGGACACCCCGGGTCAGCGGGGTCCTCCGGGCCCCCGGGTGTGAATGGTCTCACGGGGCATCGAGGGGAGCGAGGAATGAAAGGAGTTGTAGGGGAACCCGGTGTAAAGGGCGATCGAGGTTTAGCAGGATTGAAGGGAAGCAGGGGAACTGCCGGATTACCGGGGGAGAACGGGGAACCCGGGATCCACGGTAGGGCGGGGAATACGGGGGATAAAGGTGAACCTGGCGAGACCACGTGTTATGTCACGGAGAGGGGCCGGCGAGTGGAGAAATCTTGCTATGAGGCTGCGTCATACGAGGCATCCGGCAGGGATCAAACTGCGGGCGATGGGGGAGGACTCACGTATATCCGATGGGGGAGGACCACCTGCCCCGTGGGAGGTGCCAAGATAGTTTACTCAGGGCAAGCTGCAGGCACACGCCACGAGAAAGCTCGAACCGGCGGATCCCCTTACATCTGTGTGCCTAACCAACCCTGGTACTTTGGTCAGGTGGATCCCAGTACTCCGCTCGCCAACGTGTCTCAGGCGAGCCGTGACGCGCTGTTGCGGGACCAGACACGCAGCACGCTGCACGGTACCTACTTCTACCTGTCATGCGTGCTGTGCCTGGTCAGGACACGCAGCGTGCAAATCATGCTTCCCGCCCGCAAGGAATGCTACCGGGGATGGCACCGGGAGTATGATGGGTATCTGGCGGTGCAGTCTAATCGGAAGGATCACGAGAACGTCGTCTGCATCGACCGGGACTCCAGGGGACTCCTGCAAGATGCTGACTGCAGCAAGGCTTTCACAACCGCCATTTTGTGGAAACCTTGGGAAATTGAAGTACTTAGTAGCAGCATTTTTCTGCCATTTTCGGCAGTCTACAGACAAAATGACGGCGCAAGAACAAATGAAAAAGATGTTAGACGAGCTAATGGGAACACAGAGGGACGAAAACTCAGTTGTGATGTCGACGCTAGCTCAATCAAGAGGAGTGCCCGACCTGAAGATGAAATCAAGTTTACTGATGACCGTGTGTGCAAGAGCTTCCTTATGGGTCTCTGTCCTCATGAACTCTTCAACAACACATGGATCTTCAAAACTAAAATGGACCTTGGTCCATGTAGCAAGATTCACGAATCTGCCCTGAAGGCAGACTATGAGATTGCGGCAGAGAAAAGAGACTATGGATATGATATAGATAAAAATTCAAATATCAAAGAAAGGCTTGAGGAGACACAAGATGATCATAATCTTGTTCCAGAGGCCCAAGCAGTTCATGACCTGGCTGAACAGATTGGGAAAAAGCTTGCTGAAGCAGAAGCTATGGGGGCTGAGGGCAAAGTGGACGAGTCAATGGAACTCATGAAAGAGGTGGAAGAATTGAAATCAAAGAAAAGAATAGCAGAGGATGTATATCGAGAGACTCTTCCATCATCCTCTCTTCAGCAGCAGAAGCTGAGAGTTTGTGAGGTGTGTGCTGCATACCTCAGCTTGTACGACAACGACCGCAGGTTGGCTGATCATTTTGGAGGAAAACTTCACATGGGCTTCATCAAAATTCGTGACAGACTGAAAGAGCTACAGGATGGAGTGGAAAAAAAGCGTGCCGACAGAGAAATGGAGCGCACGCGTCGACGTGAAGAGCGGGAAAAGGAACGAGAACAGGAGAAACGAGTCGTCGCCGCCGAAGTCGAAGTAGGAGCCACAGCAGAGAGAGAAGAAGGAGAAGGAGGAGCCGTTCAAGGTCACGTTCTCGTTCCAGATCGCGGTCAGGATCCAAATCTCGCACAAAGAACAGGTCCTCATCTCGCCGCTCCCGATCTGCTTCTCCTACAAAGCCAGCCCCTCAAGCCAAGTCACCCCAACACTCACCCCAGCAGTCACCCCAGCAGTCACCCCAACGCTCACCCCAGCAGTCACCGACAAGATCTCGTTCCAGATCAAAAAGCTAGGATTTCATCGACTTTTTAG

Transcript

OS493_013210-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y383	Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens OX=9606 GN=LUC7L2 PE=1 SV=2
Q7TNC4	Putative RNA-binding protein Luc7-like 2 OS=Mus musculus OX=10090 GN=Luc7l2 PE=1 SV=1
Q9NQ29	Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens OX=9606 GN=LUC7L PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002218 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF03194 all species →	LUC7	LUC7 N_terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004882 all species →	Family	Luc7-related	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12375 all species →	RNA-BINDING PROTEIN LUC7-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005685 all species →	Cellular Component	U1 snRNP	Interproscan
GO:0006376 all species →	Biological Process	mRNA splice site recognition	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20796	PRDM7_9; [histone H3]-lysine4 N-trimethyltransferase PRDM7/9	EC:2.1.1.354	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_013210-T1 global co-expression network