Gene detail

Detailed information of OS493_013230-T1 in Lophelia pertusa

Genomic Location: scaffold_35:1471666...1475084
NR annotation: KAJ7362139.1, vacuolar fusion protein ccz1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RJI7	Vacuolar fusion protein CCZ1 homolog OS=Nematostella vectensis OX=45351 GN=v1g238755 PE=3 SV=1
P86790	Vacuolar fusion protein CCZ1 homolog B OS=Homo sapiens OX=9606 GN=CCZ1B PE=1 SV=1
P86791	Vacuolar fusion protein CCZ1 homolog OS=Homo sapiens OX=9606 GN=CCZ1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005859 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19033 all species →	Intu_longin_3	Intu longin-like domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043989 all species →	Domain	CCZ1/INTU/HPS4, third Longin domain	Interproscan
IPR013176 all species →	Family	Vacuolar fusion protein Ccz1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13056 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0035658 all species →	Cellular Component	Mon1-Ccz1 complex	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013230-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013230-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

23.1Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.74	17.21
polyp at pH7 6	18	18	12.78	23.07
coral polyp · control treatment	16	16	12.87	20.55
coral polyp · oil and dispersant treatment	16	16	7.31	10.08
coral polyp · oil treatment	16	16	12.16	18.46
coral polyp · dispersant treatment	16	16	5.44	13.35
Polyp	10	10	8.84	19.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.96
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.79
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.86
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.96
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.01

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.