Gene detail

Detailed information of OS493_013231-T1 in Lophelia pertusa

Genomic Location: scaffold_35:1476250...1479407
NR annotation: KAJ7362140.1, vacuolar fusion protein ccz1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RJI7	Vacuolar fusion protein CCZ1 homolog OS=Nematostella vectensis OX=45351 GN=v1g238755 PE=3 SV=1
Q8C1Y8	Vacuolar fusion protein CCZ1 homolog OS=Mus musculus OX=10090 GN=Ccz1 PE=1 SV=1
P86790	Vacuolar fusion protein CCZ1 homolog B OS=Homo sapiens OX=9606 GN=CCZ1B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005859 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19031 all species →	Intu_longin_1	First Longin domain of INTU, CCZ1 and HPS4	Domain	Interproscan
PF19032 all species →	Intu_longin_2	Intu longin-like domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043987 all species →	Domain	CCZ1/INTU/HSP4, first Longin domain	Interproscan
IPR043988 all species →	Domain	CCZ1/INTU, second Longin domain	Interproscan
IPR013176 all species →	Family	Vacuolar fusion protein Ccz1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13056 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0035658 all species →	Cellular Component	Mon1-Ccz1 complex	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013231-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013231-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

11.2Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	2.63	8.90
polyp at pH7 6	18	12	3.50	7.46
coral polyp · control treatment	16	16	6.08	11.19
coral polyp · oil and dispersant treatment	16	15	3.57	6.88
coral polyp · oil treatment	16	16	5.43	9.67
coral polyp · dispersant treatment	16	16	3.44	7.11
Polyp	10	8	3.33	9.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.66
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.98
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.