Gene detail

Detailed information of OS493_013233-T1 in Lophelia pertusa

Genomic Location: scaffold_35:1494767...1496476
NR annotation: KAJ7362142.1, Exocyst complex component 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O54922	Exocyst complex component 7 OS=Rattus norvegicus OX=10116 GN=Exoc7 PE=1 SV=1
O35250	Exocyst complex component 7 OS=Mus musculus OX=10090 GN=Exoc7 PE=1 SV=2
Q9UPT5	Exocyst complex component 7 OS=Homo sapiens OX=9606 GN=EXOC7 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004709 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03081 all species →	Exo70_C	Exo70 exocyst complex subunit C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR004140 all species →	Family	Exocyst complex component Exo70	Interproscan
IPR046364 all species →	Domain	Exocyst complex subunit Exo70, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12542 all species →	EXOCYST COMPLEX PROTEIN EXO70	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013233-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013233-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

72.5Max TPM

28.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	36.34	57.42
polyp at pH7 6	18	18	39.98	64.08
coral polyp · control treatment	16	16	25.10	42.16
coral polyp · oil and dispersant treatment	16	16	16.34	27.68
coral polyp · oil treatment	16	16	23.84	47.19
coral polyp · dispersant treatment	16	16	13.68	24.74
Polyp	10	10	48.32	72.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.96
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.70
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.04
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	72.49
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	63.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	52.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	50.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	45.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	44.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	43.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	42.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	41.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.72

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.