Gene detail

Detailed information of OS493_013464-T1 in Lophelia pertusa

Genomic Location: scaffold_37:74269...78597
NR annotation: KAJ7392097.1, hypothetical protein OS493_013464 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43826	Glucose-6-phosphate exchanger SLC37A4 OS=Homo sapiens OX=9606 GN=SLC37A4 PE=1 SV=1
O84548	Probable hexose phosphate transport protein OS=Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx) OX=272561 GN=CT_544 PE=3 SV=1
Q9PJJ8	Probable hexose phosphate transport protein OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=TC_0831 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007669 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR051337 all species →	Family	Organophosphate:Pi Antiporter	Interproscan
IPR000849 all species →	Family	Sugar phosphate transporter	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43826 all species →	GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0015760 all species →	Biological Process	glucose-6-phosphate transport	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0035435 all species →	Biological Process	phosphate ion transmembrane transport	Interproscan
GO:0061513 all species →	Molecular Function	glucose 6-phosphate:phosphate antiporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08171	SLC37A4; MFS transporter, OPA family, solute carrier family 37 (glycerol-6-phosphate transporter), member 4	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013464-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

10.0Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.71	2.96
polyp at pH7 6	18	15	1.91	4.24
coral polyp · control treatment	16	16	3.74	9.99
coral polyp · oil and dispersant treatment	16	16	3.04	7.13
coral polyp · oil treatment	16	16	2.74	7.58
coral polyp · dispersant treatment	16	15	1.93	4.49
Polyp	10	8	1.39	2.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.99
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.37
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.27
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.