Gene detail

Detailed information of OS493_013467-T1 in Lophelia pertusa

Genomic Location: scaffold_37:85961...88919
NR annotation: KAJ7392100.1, hypothetical protein OS493_013467 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SVT1	Protein adenylyltransferase Fic OS=Nematostella vectensis OX=45351 GN=v1g194069 PE=3 SV=1
Q17A75	Protein adenylyltransferase Fic OS=Aedes aegypti OX=7159 GN=AAEL005383 PE=3 SV=1
B4JBN5	Protein adenylyltransferase Fic OS=Drosophila grimshawi OX=7222 GN=GH10751 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008492 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02661 all species →	Fic	Fic/DOC family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040198 all species →	Family	Fido domain-containing protein	Interproscan
IPR036597 all species →	Homologous_superfamily	Fido-like domain superfamily	Interproscan
IPR003812 all species →	Domain	Fido domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13504 all species →	FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04095	fic, FICD, HYPE; cell filamentation protein, protein adenylyltransferase	EC:2.7.7.108	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013467-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.1Max TPM

11.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.42	7.69
polyp at pH7 6	18	18	6.79	9.24
coral polyp · control treatment	16	16	13.47	34.67
coral polyp · oil and dispersant treatment	16	16	18.41	25.67
coral polyp · oil treatment	16	16	10.21	17.07
coral polyp · dispersant treatment	16	16	15.50	37.05
Polyp	10	10	8.20	15.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.40
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.66
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.77
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.