Gene detail

Detailed information of OS493_013504-T1 in Lophelia pertusa

Genomic Location: scaffold_37:479791...488971
NR annotation: KAJ7392132.1, hypothetical protein OS493_013504 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002028 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_013504-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR007724 all species →	Family	Poly(ADP-ribose) glycohydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12837 all species →	POLY ADP-RIBOSE GLYCOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004649 all species →	Molecular Function	poly(ADP-ribose) glycohydrolase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006282 all species →	Biological Process	regulation of DNA repair	Interproscan
GO:0009225 all species →	Biological Process	nucleotide-sugar metabolic process	Interproscan
GO:1990966 all species →	Biological Process	ATP generation from poly-ADP-D-ribose	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013504-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013504-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

42.5Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.01	21.30
polyp at pH7 6	18	18	15.54	26.51
coral polyp · control treatment	16	16	18.58	42.46
coral polyp · oil and dispersant treatment	16	16	13.58	38.60
coral polyp · oil treatment	16	16	17.82	25.42
coral polyp · dispersant treatment	16	16	11.96	22.36
Polyp	10	10	11.83	19.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.14
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.93
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.03
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.24
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.14
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.06
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.