Gene detail

Detailed information of OS493_013506-T1 in Lophelia pertusa

Genomic Location: scaffold_37:499486...514566
NR annotation: KAJ7392134.1, hypothetical protein OS493_013506 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DEB1	Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis OX=8355 GN=etnppl PE=2 SV=1
Q5E9S4	Ethanolamine-phosphate phospho-lyase OS=Bos taurus OX=9913 GN=ETNPPL PE=2 SV=1
Q8TBG4	Ethanolamine-phosphate phospho-lyase OS=Homo sapiens OX=9606 GN=ETNPPL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45688 all species →	ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14286	AGXT2L1, ETNPPL; ethanolamine-phosphate phospho-lyase	EC:4.2.3.2	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013506-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

229.1Max TPM

70.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.12	60.50
polyp at pH7 6	18	18	43.64	57.78
coral polyp · control treatment	16	16	73.80	129.76
coral polyp · oil and dispersant treatment	16	16	132.49	229.14
coral polyp · oil treatment	16	16	69.81	101.49
coral polyp · dispersant treatment	16	16	93.94	226.24
Polyp	10	10	35.40	57.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.03
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.98
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	129.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	229.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	190.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	190.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	189.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	160.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	131.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.06
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.36
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.11
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	226.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	191.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	129.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	128.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	126.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.60
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.57
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	57.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	46.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.64
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	33.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	31.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.07
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.