Gene detail

Detailed information of OS493_013507-T1 in Lophelia pertusa

Genomic Location: scaffold_37:522712...533540
NR annotation: KAJ7392135.1, hypothetical protein OS493_013507 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DEB1	Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis OX=8355 GN=etnppl PE=2 SV=1
Q5E9S4	Ethanolamine-phosphate phospho-lyase OS=Bos taurus OX=9913 GN=ETNPPL PE=2 SV=1
Q8BWU8	Ethanolamine-phosphate phospho-lyase OS=Mus musculus OX=10090 GN=Etnppl PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001439 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202 all species →	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005814 all species →	Family	Aminotransferase class-III	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR049704 all species →	Conserved_site	Aminotransferases class-III pyridoxal-phosphate attachment site	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45688 all species →	ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14286	AGXT2L1, ETNPPL; ethanolamine-phosphate phospho-lyase	EC:4.2.3.2	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013507-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

11.9Max TPM

2.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.33	11.92
polyp at pH7 6	18	12	3.11	9.84
coral polyp · control treatment	16	14	1.53	4.76
coral polyp · oil and dispersant treatment	16	13	1.68	6.36
coral polyp · oil treatment	16	16	3.30	9.23
coral polyp · dispersant treatment	16	14	1.88	8.11
Polyp	10	7	0.75	2.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.