Detailed information of OS493_013596-T1 in Lophelia pertusa

Genomic Location: scaffold_37:1906226...1912590
NR annotation: KAJ7392220.1, Plastin-3 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DG81Plastin-3 OS=Danio rerio OX=7955 GN=pls3 PE=2 SV=1
O88818Plastin-3 OS=Cricetulus griseus OX=10029 GN=PLS3 PE=2 SV=3
Q99K51Plastin-3 OS=Mus musculus OX=10090 GN=Pls3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001622 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00307
all species →		CHCalponin homology (CH) domainDomainInterproscan
PF13499
all species →		EF-hand_7EF-hand domain pairDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002048
all species →		DomainEF-hand domainInterproscan
IPR036872
all species →		Homologous_superfamilyCH domain superfamilyInterproscan
IPR018247
all species →		Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR001715
all species →		DomainCalponin homology domainInterproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan
IPR039959
all species →		FamilyFimbrin/PlastinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19961
all species →		FIMBRIN/PLASTINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005884
all species →		Cellular Componentactin filamentInterproscan
GO:0032432
all species →		Cellular Componentactin filament bundleInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan
GO:0051017
all species →		Biological Processactin filament bundle assemblyInterproscan
GO:0051639
all species →		Biological Processactin filament network formationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_013596-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_013596-T1 global co-expression network
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