Gene detail

Detailed information of OS493_013599-T1 in Lophelia pertusa

Genomic Location: scaffold_37:1952472...1959863
NR annotation: KAJ7392223.1, Beta-1,4-glucuronyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
L7YAI7	Beta-1,4-glucuronyltransferase 1 OS=Danio rerio OX=7955 GN=b4gat1 PE=1 SV=1
Q5EA01	Beta-1,4-glucuronyltransferase 1 OS=Bos taurus OX=9913 GN=B4GAT1 PE=2 SV=2
O43505	Beta-1,4-glucuronyltransferase 1 OS=Homo sapiens OX=9606 GN=B4GAT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007571 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13896 all species →	Glyco_transf_49	Glycosyl-transferase for dystroglycan	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043189 all species →	Family	Beta-1,4-glucuronyltransferase 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46420 all species →	BETA-1,4-GLUCURONYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0015020 all species →	Molecular Function	glucuronosyltransferase activity	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21032	B4GAT1; beta-1,4-glucuronyltransferase 1	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013599-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

12.2Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.01	6.63
polyp at pH7 6	18	16	4.10	6.96
coral polyp · control treatment	16	16	5.01	12.24
coral polyp · oil and dispersant treatment	16	16	3.06	6.79
coral polyp · oil treatment	16	16	4.61	9.12
coral polyp · dispersant treatment	16	16	1.85	3.51
Polyp	10	9	4.64	11.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.