Gene detail

Detailed information of OS493_013617-T1 in Lophelia pertusa

Genomic Location: scaffold_37:2113887...2129688
NR annotation: KAJ7392239.1, Dynein assembly factor 3, axonemal [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32NQ7	Dynein axonemal assembly factor 3 OS=Xenopus laevis OX=8355 GN=dnaaf3 PE=2 SV=1
F6S9E6	Dynein axonemal assembly factor 3 OS=Xenopus tropicalis OX=8364 GN=dnaaf3 PE=3 SV=2
D3ZCM9	Dynein axonemal assembly factor 3 OS=Rattus norvegicus OX=10116 GN=Dnaaf3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004926 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14737 all species →	DUF4470	Domain of unknown function (DUF4470)	Family	Interproscan
PF14740 all species →	DUF4471	Domain of unknown function (DUF4471)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027974 all species →	Domain	Domain of unknown function DUF4470	Interproscan
IPR028235 all species →	Domain	Dynein assembly factor 3, C-terminal domain	Interproscan
IPR039304 all species →	Family	Dynein assembly factor 3, axonemal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22118 all species →	DYNEIN ASSEMBLY FACTOR 3, AXONEMAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan
GO:0070286 all species →	Biological Process	axonemal dynein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19752	DNAAF3, PF22; dynein axonemal assembly factor 3	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013617-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

48.0Max TPM

11.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.27	18.00
polyp at pH7 6	18	18	14.34	30.02
coral polyp · control treatment	16	16	12.46	36.81
coral polyp · oil and dispersant treatment	16	16	6.88	27.35
coral polyp · oil treatment	16	16	10.13	14.73
coral polyp · dispersant treatment	16	16	7.30	18.24
Polyp	10	10	18.90	47.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.37
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.37
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	47.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.02
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.