Gene detail

Detailed information of OS493_013623-T1 in Lophelia pertusa

Genomic Location: scaffold_37:2220570...2224551
NR annotation: KAJ7392245.1, Low density lipoprotein receptor- protein associated protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008256 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06400 all species →	Alpha-2-MRAP_N	Alpha-2-macroglobulin RAP, N-terminal domain	Domain	Interproscan
PF06401 all species →	Alpha-2-MRAP_C	Alpha-2-macroglobulin RAP, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009066 all species →	Domain	Alpha-2-macroglobulin receptor-associated protein, domain 1	Interproscan
IPR038003 all species →	Family	Alpha-2-macroglobulin receptor-associated protein	Interproscan
IPR010483 all species →	Domain	Alpha-2-macroglobulin RAP, C-terminal	Interproscan
IPR036744 all species →	Homologous_superfamily	RAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16560 all species →	ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0048019 all species →	Molecular Function	receptor antagonist activity	Interproscan
GO:0048259 all species →	Biological Process	regulation of receptor-mediated endocytosis	Interproscan
GO:0050750 all species →	Molecular Function	low-density lipoprotein particle receptor binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0008201 all species →	Molecular Function	heparin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22290	LRPAP1; alpha-2-macroglobulin receptor-associated protein	-	Cholesterol metabolism	ko04979	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013623-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

96.7Max TPM

40.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	37.36	47.97
polyp at pH7 6	18	18	39.76	73.88
coral polyp · control treatment	16	16	54.61	96.66
coral polyp · oil and dispersant treatment	16	16	36.19	67.24
coral polyp · oil treatment	16	16	50.83	87.67
coral polyp · dispersant treatment	16	16	39.34	81.07
Polyp	10	10	21.55	41.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.10
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	73.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.79
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.69
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.61
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.69
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.58
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.74
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	31.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	27.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.97
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.75
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.18

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.