Gene detail

Detailed information of OS493_013627-T1 in Lophelia pertusa

Genomic Location: scaffold_37:2300411...2303858
NR annotation: KAJ7392249.1, tRNA (guanine-N(7)-)-methyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2YDF1	tRNA (guanine-N(7)-)-methyltransferase OS=Bos taurus OX=9913 GN=METTL1 PE=2 SV=1
Q9UBP6	tRNA (guanine-N(7)-)-methyltransferase OS=Homo sapiens OX=9606 GN=METTL1 PE=1 SV=1
Q5XJ57	tRNA (guanine-N(7)-)-methyltransferase OS=Danio rerio OX=7955 GN=mettl1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005226 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02390 all species →	Methyltransf_4	Putative methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003358 all species →	Family	tRNA (guanine-N-7) methyltransferase, Trmb type	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23417 all species →	3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0008176 all species →	Molecular Function	tRNA (guanine(46)-N7)-methyltransferase activity	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0036265 all species →	Biological Process	RNA (guanine-N7)-methylation	Interproscan
GO:0043527 all species →	Cellular Component	tRNA methyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013627-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013627-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

35.9Max TPM

10.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	10.35	20.67
polyp at pH7 6	18	15	7.76	19.04
coral polyp · control treatment	16	16	13.68	35.90
coral polyp · oil and dispersant treatment	16	16	12.36	35.92
coral polyp · oil treatment	16	16	13.46	35.95
coral polyp · dispersant treatment	16	16	6.60	16.97
Polyp	10	9	10.21	17.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.92
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.30
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.