Gene detail

Detailed information of OS493_013662-T1 in Lophelia pertusa

Genomic Location: scaffold_37:2761542...2771609
NR annotation: KAJ7392282.1, hypothetical protein OS493_013662 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_013662-T1

ATGTCGTATTTAGCGACACCCGAGAAAACAGTTCAATGGTTAATTGCTTTCTTTATCATACTAAAGTGTATCGAGGCTTCCAAAACTAGTTCTGCTAAACATGTTGAGGACGACGTCGATGGTCTCTTAGCCAATTCCAGTTCATTGCAAGCCAAATGGTTCAACAACTTGTCCAAAGATCTGTTGAACCAAACTTCAGCTTCGTTTAAAAATGGCAGTGCAGCTTTTGATCCAGACGTCGTTGTCCAGAACATGATTGATTCATTGAAAGAGGAAAGTAAAGCCCAAGGGAAGCAAGTGCCAGAGTATTATTATCAAAGTTTGGAAGATTTGAAGACTGATCCTGATTTCATCAAAATTCGGAGGGAGTTTGATGAGGCACTTAACGGTGAAAGAAATATGATGACTATAGGAACTGATCTACCAGAACTTCAAGAAGAAGAATCGAATCCAATTAAAGATGTCGGGCTCAAAGGGCAAGTGATAACTGGCGAAGAGACTGAATCCGAGAATGACCTGATAAGATACAGTAACTACATGTCAGGTGCAGGATCCACCACTGGAGGTTTTCTGGCTGGTCTTCCTCAAGATATCAAAGATATAACAAAAGGAACGATGAACAGCTTAACTTTCAAATACGATCTTCTTCAGTACAAATTAAAGAAGGGAATTAAAGTCGATGTGCTCAGAGATGAAAACTTTGACAACATGGTAAAATATAACATAGCCCCTCGAGAAGAGCTTCGCACAAAGAGAGGCGGCGTGCCAGGTATCGACGAAACGGTGGTGTCGGAACAATTTGAAGAGATCAAACGTCTTTCAGGTGTCAGTGATGAGCAAAGATTGGCTCAACAAAACTTCAATACCCAGAAAAAATTGCGACAGCAAAGAGGAAGGACTTCATCCAGAAAGATAGCTGGTAAAATGTTACTTAAGGTTGGCAACGGTGTTGAGACCGCTAGTACTGCATTTAGTTTTGCTCAGGGAGGAATTGATACTGCAGCTGGCAGTGATATGATCCAGAAAGCTCGTGATTTAAGAGCCAGAGGTCAAATTAAAGAGGTTGATTATAATGAATTGATGACAAACGGACGGCTTCGGGTTGCACAAGGAAGCTTTGGTCTGGCCAATGGAATGAAAAATGTCGTGAAATTTGTTGGTAAAAGGGTCGAGAAAAACCTTGAGAAAAGAGCAATTCAAGCTGGAAAAAAGTTATTTAACCAAGCAAAACGGTTTGGATCTTTTGTTGGTGGTGCTATTTCAGTTGGTACAAGTGTTGTGTCTATGACAAAGAATATAATTGCCGCACGTGACGCTAAAAATGTTGGTAAAGCTGTTATGTATAGAGTCATGGCTGCCGTTGATGGGGTTACGGCTGTTCTGGACGTAATAAGTGTAGCTTTAGATTTTTTGTTTCCACCCTTGTCAGTAATCGTGGATCTTGTTAGTACGATCTTGCAGATAATAAATACAATTCTTGGTTTCTTTGCTGATTTGATCGACTTCAGAACACATGCAGAACGAGTACATGAGGAATTTAAGACATATATAGAGTCCGAAGCATTTAAAAAGTATTTAAGGAACATGGCAGATGAATATAAGAGAAGAGGATTTGACATCTTTACATACCTTGTAGATGCTGAAGTGGCAGGGATAGAGGCTGACAAGGAAACTTTACAAGCTGAAAGGAGGAATTTCACCGAGTGTCTAACGGATAAAGCGAAGGCAGATTTTAATAACAAGCAACTAAGAGTAGCATTATTAGACCCAACATCTTTTGGTAAGACGCTGCGGGGTCGAACAAATGATGATGAGATTGTAGCTGGTTTTGGTCCAGATCGTATTTATGGTGAAGAGGGTGATGACGTATTGTTTGGACGAGGCGGAAATGACACCATTTATGGAGGTCCAGGAAATGACTATCTTAATGGCGGAACAGGAAGAGACACTCTTCTTGGTGGAGAAGGTGACGATTTTCTAGTCTGTGAGCCCGGTGTCGATATCCGGTGTGAAGGTGAAGAAGGAGAAGATATTTTAGCCTTATCTGGCGAATCTTTAATGTTTAAAGACGCCCTTCAGGGTGGGAACAACATCATGATGGGGAGACAAGGTTTTCCACTAATAGAATCACCAGTAACAGGAATTTATTTGGATATTGGATATTCCTCGGGAAGTGGATCAAGTGCCAAGAAAGGAAGAGGAGGTATTAATCTCGGATCCTGTTTTCCTGGATGGCCGGACGGTTTCAATACACTAATTCACAAACCAGCATTTATTTCTTCAAGCAATCTGGAACAGAGGTTTGAGAGTCTTTTCAATAGCAAGAACCCTGTATCTCTCACGAACACAAACGAATTAATAAGCAAAATGTTGTGGTTTCTGGCAGAGAAAAATGGCGTGAAGTACTTCTGTGATGGAATATCTTTTTATGCCATCTCTTCATCATCGGTGCGAGTCGCCAGAGATGCCATTAACAGTATTTCTACCAGTCATGCTGTCTATAGCAATGAACGTCTACAATACCGCGGAAATAATGAACTAGAAGCACTTTTGGTATTTGCTTTCCGAAGTATTTTTGTATTTGATGAATTTGAGAAGATCTCTGCTGCACAACCAGACAATTTGACAATCTTGTCTCACTACATTCCAACAACTGTCATTGGTAGCGATGATCACAATGTTATAGATTTATCGTATGGTCTTGGTGATGTAGTGTACACTGGTGAAGGGAACAACGTTATTTCCATTGGAAGTACTTTAAACTGGTATTCTGATACGGACAGCACGGTCGGGGCGCAAAAGCATGAAGGTTTTTACACCTGGGCCAAATACATTGTTGGTGGCAGTGGAAACAACACACTAGTCATCCAATATATGCCCCTTCCCGGAGAATCGGTGGAAAATCGTTATTATGGTCAATGGCAACTTAGAAATATCGACAGCCTAGCTGATATGGGATCATCTTCCAGTTTTAGTACTCATATTGTTTACTTGCAAAACATAAAAACTGTTGAAATACACGCTCCAGATCTCGGCGCAAGCAACCAGCGATATCTTAATATAGATGCTGAAAACTATGATGGGGCAAGAAGGTATATTCTTGACGATGCAAAATTTTTCTCTGGCCCTCTTTCAAGTGAAAACGATGTAACTGTATTGCCAAGAAGACTGAAAAGAACTGTTCATATCAAATTTGGTACAGCTACTAAAAATACCATTTCCTTTAAGCATTACGAAGACGAGAGAAACCCGATCAACACAGTAAATATACGGCGCCACAATGAAGGGTTTTTGACTTTCTCAAGATCAGGGCCGCGTCCACGTTTGGTAAATGCAATGAACGTGATTAGCTTCCCGTCGTGCAAACACATCATTGGTAACAACAAGGAGAATCTTCTTATTGCTGTGGGCGGACAAACAACTATTGAGGCGGATGATGGGGATGACACCCTCGTGAGCGCCCGAGGAAGACATGAGTTGATTGGTGGTGATGGTGCAGATACCTATGTACTCCATGGTCCCGATGTGGCTGACTATTTGACAATTAACGTTATTATGGGAGCTGACGGACACACTATCAGATGTAAAACAACCATTGATGGAACATGGATGGAGGCAGATGGACGACTTGATATCGAGGTGTTAAAACATGATCATGAAAGTGTTCTTTTGAACACTGTTGAGATCATTCCAGCCGAAGGGGATGAGAGTAAAAACTTAGGCACCATTGCTAAGGATACCACTAACAAAAAGATTATTTTTCGGCCTGGATTGAATTTCAATTCTTTGGAGAAGAACAAGGCTAAAACATTGAGAATAAAATTTACAACAACAGGAAGCATGTCAACAATCAAAGAACGGGATTATGGAAATCAATTACGTTTTGAGTCCATATCGAGTCTTGACCATTTAACAGCAAGTACTGAAGACAATAAACTGGTATTCAAGGATAAATCAAACCCTCCAAGAACTGTCCTTATTGACCATGAATGGAGTAATAAGCTTACGAATGGAATATATACAAGTGTGTTTGATCTAATTGTAGACTTTGTTGAACGTTTCCCATTGATTCTCTTTCGAGGACAAGATGAGCAACAATATAACCGTGCAACATCAAAAGATATAATAAAATTCCTGTACAAACATTTGGAAAACCTTGTGAGTGATCTTGGACAAGACTACGACACTCTGCTTGATTCCACATCCCTCCCTTCTACTGTCGGCCCCGAAATTGACATTGGAAATGGTCAGAATATTGTCCTAGCAAAAACAAGAAACAAAACATACACAATTGGAAGCAAATCGTCTGGAAGCATCATCATAGCCAAGAACTTCGCACAAGGCACAGGAAACGTCACCATTAAAGGTGGAGATGACAGGAACAGTCTCAACGCAGTGGTTATTGGGGCAGGATCTGATACACCGGTAGAAATTCAGATGGGACCACATGATCTGATAATAACTGGTGCTCGGCCGAGCGATGTAGTATTCTACTTGGATAATGATATGGTTCATCTAAAAGATTCCACACAGCGAGATTTGATTCAACGATGGAACTATGACAACTGTAAAAATATCATCTTCAAGCATTCCGTACAAGCAACAAGCACACCAAGATCTAGAATGAAAGAACAGACTGAGATCATTTTTGATTGTCCCAAATACGTCTTAAGTAAAGTCTCCGCGTCCTATAGGGATTTTAATCCTTACTCAGTCTCGTATGATTCACTGACAGTTAATAAGCTCAAACTTAACTGTCCATACAACAAAGAGGATGTAATTATTCGAATCACTTCTGGGCCGGTTATCGGCGGGAATTGGATCAATTCGATCCAGGTTATGTTAACACCAGATCCATGGCGTGGGTATGCTAAAACTAGGTATCAATACTTGCTCATCCCAACCAGTTATCCTTTGACGAGGAATTCGATGTCAAGATGCTGGTCAACGCCTTTCGCTTCCGGTTTAAGGCTGGTATCAAATTTCGCAATGGGTTGGTAG

Transcript

OS493_013662-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011359 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00353 all species →	HemolysinCabind	RTX calcium-binding nonapeptide repeat (4 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011049 all species →	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR001343 all species →	Repeat	RTX calcium-binding nonapeptide repeat	Interproscan
IPR018511 all species →	Conserved_site	Hemolysin-type calcium-binding conserved site	Interproscan
IPR050557 all species →	Family	RTX toxin and mannuronan C5-epimerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38340 all species →	S-LAYER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013662-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013662-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

1.1Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	0.30	0.65
polyp at pH7 6	18	17	0.43	0.86
coral polyp · control treatment	16	16	0.24	0.97
coral polyp · oil and dispersant treatment	16	12	0.16	1.11
coral polyp · oil treatment	16	14	0.13	0.54
coral polyp · dispersant treatment	16	14	0.19	0.84
Polyp	10	5	0.06	0.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.05
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.19
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.