Gene detail

Detailed information of OS493_013675-T1 in Lophelia pertusa

Genomic Location: scaffold_38:103176...104718
NR annotation: KAJ7385649.1, hypothetical protein OS493_013675 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001712 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_013675-T1 in Lophelia pertusa.

InterPro

No InterPro signature was recorded for OS493_013675-T1 in Lophelia pertusa.

PANTHER

PANTHER term	Description	Source
PTHR23179 all species →	T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013675-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013675-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

34.7Max TPM

14.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.71	27.66
polyp at pH7 6	18	18	15.66	23.23
coral polyp · control treatment	16	16	15.45	27.34
coral polyp · oil and dispersant treatment	16	16	10.41	19.37
coral polyp · oil treatment	16	16	15.36	27.67
coral polyp · dispersant treatment	16	16	16.39	34.73
Polyp	10	9	10.80	22.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.49
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.23
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.