Gene detail

Detailed information of OS493_013678-T1 in Lophelia pertusa

Genomic Location: scaffold_38:122836...123751
NR annotation: KAJ7385652.1, MORC CW-type zinc finger protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F7BJB9	MORC family CW-type zinc finger protein 3 OS=Mus musculus OX=10090 GN=Morc3 PE=1 SV=1
Q14149	MORC family CW-type zinc finger protein 3 OS=Homo sapiens OX=9606 GN=MORC3 PE=1 SV=3
Q8TE76	MORC family CW-type zinc finger protein 4 OS=Homo sapiens OX=9606 GN=MORC4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003253 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR045261 all species →	Family	MICRORCHIDIA ATPase family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23336 all species →	ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013678-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013678-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

61.6Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	6.42	11.57
polyp at pH7 6	18	14	5.07	8.90
coral polyp · control treatment	16	16	11.36	19.45
coral polyp · oil and dispersant treatment	16	16	15.71	30.95
coral polyp · oil treatment	16	16	8.25	15.03
coral polyp · dispersant treatment	16	16	25.99	61.60
Polyp	10	10	4.22	7.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.06
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.64
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.17
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.66
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.02
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.