Gene detail

Detailed information of OS493_013685-T1 in Lophelia pertusa

Genomic Location: scaffold_38:166195...169177
NR annotation: KAJ7385659.1, hypothetical protein OS493_013685 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1ZAY1	SH3 domain-containing protein Dlish OS=Drosophila melanogaster OX=7227 GN=Dlish PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001837 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR043539 all species →	Family	Grb2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46037 all species →	PROTEIN ENHANCER OF SEVENLESS 2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001784 all species →	Molecular Function	phosphotyrosine residue binding	Interproscan
GO:0005154 all species →	Molecular Function	epidermal growth factor receptor binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan
GO:0043408 all species →	Biological Process	regulation of MAPK cascade	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26546	Dlish; SH3 domain-containing protein Dlish	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013685-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

10.2Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.75	8.30
polyp at pH7 6	18	18	4.69	6.89
coral polyp · control treatment	16	16	6.46	10.21
coral polyp · oil and dispersant treatment	16	16	4.55	7.23
coral polyp · oil treatment	16	16	5.82	9.28
coral polyp · dispersant treatment	16	16	4.39	9.52
Polyp	10	10	3.36	6.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.36

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.