Gene detail

Detailed information of OS493_013702-T1 in Lophelia pertusa

Genomic Location: scaffold_38:306862...312079
NR annotation: KAJ7385675.1, hypothetical protein OS493_013702 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q497Q6	Protein FAM228B OS=Mus musculus OX=10090 GN=Fam228b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006208 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_013702-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR040046 all species →	Family	Protein FAM228	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28584 all species →	FAMILY WITH SEQUENCE SIMILARITY 228 MEMBER A	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_013702-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013702-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013702-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

33.2Max TPM

9.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.43	12.55
polyp at pH7 6	18	18	6.05	12.10
coral polyp · control treatment	16	16	11.82	26.33
coral polyp · oil and dispersant treatment	16	16	8.25	13.18
coral polyp · oil treatment	16	16	9.09	14.70
coral polyp · dispersant treatment	16	16	11.91	24.05
Polyp	10	10	11.98	33.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.33
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.