Gene detail

Detailed information of OS493_013710-T1 in Lophelia pertusa

Genomic Location: scaffold_38:371431...372551
NR annotation: KAJ7385682.1, pyruvate transporter mpc1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63030	Mitochondrial pyruvate carrier 1 OS=Mus musculus OX=10090 GN=Mpc1 PE=1 SV=1
P63031	Mitochondrial pyruvate carrier 1 OS=Rattus norvegicus OX=10116 GN=Mpc1 PE=3 SV=1
Q9Y5U8	Mitochondrial pyruvate carrier 1 OS=Homo sapiens OX=9606 GN=MPC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010305 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03650 all species →	MPC	Mitochondrial pyruvate carriers	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005336 all species →	Family	Mitochondrial pyruvate carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14154 all species →	UPF0041 BRAIN PROTEIN 44-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006850 all species →	Biological Process	mitochondrial pyruvate transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22138	MPC1; mitochondrial pyruvate carrier 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013710-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

97.9Max TPM

32.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.91	35.55
polyp at pH7 6	18	18	26.58	34.35
coral polyp · control treatment	16	16	37.19	76.24
coral polyp · oil and dispersant treatment	16	16	45.16	64.17
coral polyp · oil treatment	16	16	29.08	45.29
coral polyp · dispersant treatment	16	16	43.79	97.93
Polyp	10	10	20.71	33.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.04
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.01
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	33.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	31.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.