Gene detail

Detailed information of OS493_013732-T1 in Lophelia pertusa

Genomic Location: scaffold_38:619984...626041
NR annotation: KAJ7385703.1, hypothetical protein OS493_013732 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_013732-T1

ATGATTGTTATTGCGAGCTGTCTGGGATTCATACGCCTTCGCTTCGAGCAGCCCTCCACTGAACGTTTCTCTGCGACTGACAGCCAATCCAGACAAGACATGCGTCGTGCAGCACAATTCTTCCCACTTCTTGAAGCGCGCCAAGAGCAGGTTATCATGATCCCTAAACATGGTCAAAATATCTTAAGTGAAGATTGTCTGAAGGAAGCCATTCTCGTACACCAGGCCATAGTGAACATCAGTGGCTACGGTGAAATATGTTTCAAGCAACTGCATTCCAAAACGAGACAAAAACGTGTTAAACAAGAATGCGTCATCAGCAGTCCTCTTGAATTAGCTGGTACTCACTTCGAACATTTCAGCAACCTTTCTTCCATTTTGGGTCGTGAGTTGACAAATGGCACGATTGTTCTCTCCACTGGTCAAACATTCAATTCCTCCTTCACAAAAATGCTCAGCAATTTTCAAGTTAAATCCAAGACAGATTCACTGACTGCTCAAGCCAACGCCCTTCGAGTTATTTTCTTCATTAGAGAGACAACAAGTGAAGAAGACGACCAGGCGATTCTAAACTTTGAAAAATCGTTTGAGAGTGTCCTCTCGTCAATGAGTCATCGCTTCAAATGCGCATCATTATTCTTCAAGACTGAGAAAACAACAAATGATGCCTTGCAGAACATCCTGAAACCAGAACTAAAACCACTTTATTTGTCGGCTTTGACAATGGTACTTCTTGTCTTTTGTGTCATATACCTTTCTTCTGACACCCTCAGTTGCCTAACAACAGTCGTCCTGATTATTGCAACCATTATCTTACCCTTTGCTTGTACTGCAGGCATAATTTCCATGGTTGACTATCCGCTTTTCCCAACTACCTTGTTTATTCCCTTCTTGCTGTTGGAAAAAGCAACCTCGGACGTCATTCTGATCGTGGGAGAATGGGACCGACATGAGGTGCCATCGCTCGAACATCGCATAATGACGTCGATTGCTGGAAAGATTCTCTCACTCGTTGCCGTTGTCGGTATCATCACTTTGTGTGTGTTGTCTGCTTTACAACCTAATGAGCGAATGAGCACTACTGCGTCCCTTTACCAAAATGACAATTTCAAGCAGTTCAGTGAGGCACAACAAACGTTCTTTGGCAACGAAACTGACACAAACATCGTTTTCTCTGAGGAAATTGACTATTCACAGGAGACTGTACAACTTGAAATGATAGACCTTTGTAAAATGCTACAAGAGGCCTCTTACAGTGAGGGGAAATCTTTGTGTTGGATGGCAGCCTTACGGCAATGGGCGAAGCTTCAAAACATGAGCTGCTTGAATTCGGATTTCTACCGGTGTTTAAACCTGTTTCTTAATCAATCCCATCACGTGCCGTATTGTCAAGACTTGCGTTTTGAAGATGAAAATCTCAGACCTCGAATTTTGGCATCTCGTGTTCATCTACGAATGGCACTACATAACCGATTTCGAGAAGACAGAGGATCGCTCGAGGAACTGAGAAAATATTTGCTCACCCGGTCTTCCCTGGAAGCTACACCAGTCTCTGAGATATTTTTCGATCTTGATGACCTCTTTTTGTTGGAAAGAGACACCGTCTTTGTTCTTATTATTGCCACTGTTGTTGTGTTTGCGCTTTCCTGGTTCTCAAGCTCAAGTCTTAGGATTAGTATATACCTAGCTATAACATTCGACGTTCTCGTATTGGAAGCAGCAGGTATTATGGATACGTGGGGGATTCATCTTAATCACATCTCCTTTCTCGTCCTCTTTATGACAGTTATTCTATCCCTGAATTTTAGCATTCAAGTGGCCCATTCGTTCGTATTTTCGACAAAGCAAGCTGTACGAGAACGCATGGTTGAAGCACTGAGCGCTGTTGCGTGCCCTGTGTTAATTGAAGCATTTATCGCGATATCTGGATCCCTTTCATTGGGATTTATTTATCCGAGTCTGGCAGACATTTTCAATCGCCTCATCCCTCTGGTGTTGGCCTTAGGACAGATCCACGCTCTCTTCATTTTTCCGCCAATCATCGTATCATTTGTCGAGTTCGTGAATCACTTGAATTATCAGAATGAAGTTGGTACCCATGTGCTACTTACCAAGAAGGAAATAAACGAGGAAGTATCGTTGCAATTACAGGATGGTGACCTACTACGACTGAAGCCTAAACGCCCTGGCATTTCTATTGTTGGTATCAGCTGCAGATTCCCTGGAGCCAGCACTAAAGACCGTTTTTGGGATTTGCTTGAGAAAGGAAAGAGTTCGATCGGTGCGTTCCCTCAGAATAGAATAGAAGAACATAAAGCGTTTTTCCAACTCTATCATCCCAAGCGATTTGTAAGTGGACGCCTTTGTGCTGTCAATGGTTCCTTCCTGGAAGAAATACAAAATTTTGACAACAGGTTCTTTGGTATATCAAATCAAGAAGCTCGTGGAATGGACCCTCAACAACGAATCCTCCTACAAGTGGTGTATGAGGCCATTGAAGATGCCGGAATGCGACTTGAAGACCTCCAGATGTGTAGAACAGGAGTATTTGTCGGTGTGATGAATCTTGAGTACGGAGCACTTTTAACAAACTCATCCAATTACAATAACATCGACCAGTTTTCATCAACGGGAATTACAGCATCTATTCTCGCCAACAGGGTGTCTTTCTGTCTTAACCTAACGGGTCCAAGTATTGCCGTTGATACGGCATGTTCTTCATCTTTAACTGCACTCAAACTCGCCTGTGGTAACCTGTACAATGAAGATTGTGAGATGGCCATCGTTTGTGCACCCAATATCGTCCTCAGCCATGCTATGCAGATGGTATCTAGTATGGCCGGCCTTCTGGCGCCTGACGGGCGTTGCAAAAGTTTTGATGCTTCTGGTGACGGCTATGGACGAGGAGAAGGCTTTGCAGCAGTTATTTTGAAGCTTTCAAACGCAGCTCAGAGTGACAAAGATGATGTATATTGCGAGATTATTGCTTGTGGTATGAACAATGATGGGCAAAATGCTATACCGATGACTGCCCCAAGTGCAAAGATGCAAGCGGAACTTTCCCAAATGGTTCTAGAACAGTCTGGAGTGGCTCCAGAAGATGTGGATTACTTCGAGGCACATGGCACTGGTACTGCAATTGGAGATGTGGTAGAGGTTACTTCGATAGCCGATAGCTACACCGCAGAAACTGGAAAGCGCACACGAAAGTTAAGAGTCGGTTCTGTTAAGTCAAACCTCAATCACACTGAATCAACTTCAGGCCTTGCTGGGCTAATCAAGGTCGCTCTGATGATCAAAAACAAGAGATTGGTGCCAACTGTTAACGTGCAGGTGCTGAATCCCAAATTAAAGTTGGAAGAGAAAGGTCTTATTGTGCAACAAACCAGCGAGCCATGGAATACAGAGACTGGAAAACCGCGAATAGGAGCCGTAAACTCGTTTGGATATGGTGGATCAAATGTGCACGTTATCCTTCGCGAAGTTACTTCAAAGCAAAGCTTACATGAAAAAAGTATTAATCGTCAAAATAATGTTCTCACCATCTCAGCGCGCTCAACAGAAGCTCTACAGAAGATGGCACGCCATTATTCCGAATGGCTTAAAGATCACGTCAGCGAACTAGATGAACCGTTTGTCAAAAACCTGTGTTACTCTTTGAATGAACGTCGCAGTCAACTCCCACACCGCTTGGCACTTTCCTTTGGATCCACTGCTGAAGCATCTGAGTCTCTGGCTGACTACGGTAACGACTCCGTGGGGTGGGATAAGTTGGCTTCATATGGTGAAGTGAACTCCACTAACCCGAAGCTCGTATTCATGTTTGGCGGACAGGGCTCTCAATGGTATGCCATGGGAAGACAGTTAATTGAAACTGAGGATGTTTTCAGAGATGCTATTTTGACTGTAAGCAATGTACTTAAAGACTTGGGAATTGGGTGGTCACTCGTAGATGAGCTCATGGCACCGGAAGACAAATCAAGAATTTCCGAGAATTGCATTGCCCAGCCAGCCACGTTTGCTGTGCAGTATGCGACAGCACGGCTACTGATGTCCTGGAGAATCTATCCCTCAGCTGTCATTGGCCACAGTCTTGGAGAGTTTGCAGCTGCATGTGTTGCTGGGATCATAACGGTCAAGGAAGCTGTTCAATTGGTGCTGACTCGCTCCACTTTGCAAGATAAATGCCCCAATAATGGTGGTATGGCGGCTTTGGGCATTTCAGAAGAAAAGGCCAGGACATTACTTACAGAACTGAAGTTAAGCGCTACACTCGACATCGCCGCAGTCAATGATGCGAAGAGCGTGACAGTTTCTGGTGATTCCCAATCAATCGAAGCCCTGGGCCAGCATCTAACAATGCACGCAAAAGGTACATTCTGGCGCGTTCTTGGAACAAAACGCGCATTTCACAGCTCACATATGGAAGGTATCAAGAAGCCTTTTCACGCAGCTATGAAAAGCGTCAAGCTAAACCCTCAACTGTCGAAGATTCCAATGTACTCTACCGTCGCGGGTGAGGTTCTCTCGGGTCAACAGTTTAACAGTGATTACTGGTGGAGTAATATTCGCTGTCCAGTCCAATTCTATCCTTCGATGAAGCACCTGCTAAAAGATGGTTACAAACAGATTATTGAGATCAGTACGCAGCCTATTTTAGCCCACTATGTCAAGCAGATTGCTCTTCAAGACAATCTTAAAGACCAAGAAACTCCAGTTGTCGTGGAAACTCTTCCTCGCAAGAGAGTACCTGTCAAAGACCAACACAAGTGTTTTCTTCAGAACACGGTATGTAAATTGTACACGTTGGGATTCCCGATAGATTGGACGTGTGTGCAGAGAAATCCATCGGCCAAGTTTGTCCGTTCGCTCAGTTATCCATGGCTGGAGAACAACTTTTGGTATAGAGAACGTCCACCCCAAATCATAATCCCTCCACTTGGTGCTAACAAAAGAACGAGGAAGCAAACACATCCATTTCTGGGACAGTTGAAAATGACCGACCCCTATTCAGGCCTGCACTGTTGGGAGACTGAGATTGACCTCCACCGTTTTCCAAATCTGAAGGACCACGCTCTTATTCAGGGAGGTACCGTCATGCCTGGAGCTGCATACCTGGAAATGGCCTTTGCGATGGTGAAGGACAAGTTCGTAGATGTTGCCGGCTTCGAACTGTGTGATGTGAAGCTCTTGAGTCTTCTTACACTGCCCGAAACACAGGTTCGATCCTTGCGACTGCGTCTTCTGAAGACCGACAAAATTGACGAGGCCACGTTCCACATTACAAGTGTACAGGATGACCAATCCGAGATTAAATTGAGCAGCGGGAGTGTCTTCGTAGATCTTTTGCACAGACAAGACAATTGTGACGACCAAGGTACTACAATAAGAATTTAG

Transcript

OS493_013732-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P9WEH6	Highly reducing polyketide synthase ltbA OS=Aspergillus luteorubrus OX=2715282 GN=ltbA PE=1 SV=1
A0A1B4XBH3	Highly reducing polyketide synthase sdnO OS=Sordaria araneosa OX=573841 GN=sdnO PE=3 SV=1
A0A1W5T1T1	Highly reducing polyketide synthase poxF OS=Penicillium oxalicum OX=69781 GN=poxF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000656 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00109 all species →	ketoacyl-synt	Beta-ketoacyl synthase, N-terminal domain	Domain	Interproscan
PF00698 all species →	Acyl_transf_1	Acyl transferase domain	Domain	Interproscan
PF21089 all species →	PKS_DH_N	Polyketide synthase dehydratase domain	Domain	Interproscan
PF02460 all species →	Patched	Patched family	Family	Interproscan
PF16197 all species →	KAsynt_C_assoc	Ketoacyl-synthetase C-terminal extension	Family	Interproscan
PF02801 all species →	Ketoacyl-synt_C	Beta-ketoacyl synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014030 all species →	Domain	Beta-ketoacyl synthase, N-terminal	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR016039 all species →	Homologous_superfamily	Thiolase-like	Interproscan
IPR014043 all species →	Domain	Acyl transferase	Interproscan
IPR016036 all species →	Homologous_superfamily	Malonyl-CoA ACP transacylase, ACP-binding	Interproscan
IPR018201 all species →	Active_site	Beta-ketoacyl synthase, active site	Interproscan
IPR020841 all species →	Domain	Polyketide synthase, beta-ketoacyl synthase domain	Interproscan
IPR050091 all species →	Family	Polyketide and Nonribosomal Peptide Biosynthesis Enzymes	Interproscan
IPR020807 all species →	Domain	Polyketide synthase, dehydratase domain	Interproscan
IPR001227 all species →	Homologous_superfamily	Acyl transferase domain superfamily	Interproscan
IPR049552 all species →	Domain	Polyketide synthase, dehydratase domain, N-terminal	Interproscan
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR049900 all species →	Domain	Polyketide/metazoan fatty acid synthase, dehydratase domain	Interproscan
IPR032821 all species →	Domain	Polyketide synthase, C-terminal extension	Interproscan
IPR014031 all species →	Domain	Beta-ketoacyl synthase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43775 all species →	FATTY ACID SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0004315 all species →	Molecular Function	3-oxoacyl-[acyl-carrier-protein] synthase activity	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan
GO:0004312 all species →	Molecular Function	fatty acid synthase activity	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013732-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_013732-T1 global co-expression network