Detailed information of OS493_013746-T1 in Lophelia pertusa

Genomic Location: scaffold_38:796949...802551
NR annotation: KAJ7385715.1, hypothetical protein OS493_013746 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7TMK9Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus OX=10090 GN=Syncrip PE=1 SV=2
O43390Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens OX=9606 GN=HNRNPR PE=1 SV=1
O60506Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens OX=9606 GN=SYNCRIP PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001390 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18360
all species →		hnRNP_Q_AcDHeterogeneous nuclear ribonucleoprotein Q acidic domainDomainInterproscan
PF00076
all species →		RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035979
all species →		Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677
all species →		Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504
all species →		DomainRNA recognition motif domainInterproscan
IPR041337
all species →		DomainHeterogeneous nuclear ribonucleoprotein Q acidic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21245
all species →		HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:1990904
all species →		Cellular Componentribonucleoprotein complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_013746-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_013746-T1 global co-expression network
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