Gene detail

Detailed information of OS493_013761-T1 in Lophelia pertusa

Genomic Location: scaffold_38:985554...987986
NR annotation: KAJ7385729.1, Centrosomal protein cep57L1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28BZ7	Centrosomal protein cep57l1 OS=Xenopus tropicalis OX=8364 GN=cep57l1 PE=2 SV=1
Q5FWP9	Centrosomal protein cep57l1 OS=Xenopus laevis OX=8355 GN=cep57l1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006097 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06657 all species →	Cep57_MT_bd	Centrosome microtubule-binding domain of Cep57	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051756 all species →	Family	Centrosomal microtubule-associated protein	Interproscan
IPR024957 all species →	Domain	Cep57 centrosome microtubule-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19336 all species →	UNCHARACTERIZED DUF1167	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013761-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013761-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

18.2Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.42	10.15
polyp at pH7 6	18	18	8.06	17.09
coral polyp · control treatment	16	16	7.90	18.22
coral polyp · oil and dispersant treatment	16	16	5.55	8.97
coral polyp · oil treatment	16	16	8.18	12.62
coral polyp · dispersant treatment	16	16	4.26	8.52
Polyp	10	10	6.72	12.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.22
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.52
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.