Gene detail

Detailed information of OS493_013763-T1 in Lophelia pertusa

Genomic Location: scaffold_38:998051...1010981
NR annotation: KAJ7385731.1, regulation of mitotic centrosome separation [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P2H3	Centrosomal protein of 85 kDa OS=Homo sapiens OX=9606 GN=CEP85 PE=1 SV=1
A0A1W2P884	Centrosomal protein of 85 kDa-like OS=Mus musculus OX=10090 GN=Cep85l PE=3 SV=1
Q8BMK0	Centrosomal protein of 85 kDa OS=Mus musculus OX=10090 GN=Cep85 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003999 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_013763-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040210 all species →	Family	Cep85/Cep85L	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31075 all species →	CENTROSOMAL PROTEIN OF 85 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013763-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013763-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

41.3Max TPM

14.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.53	15.70
polyp at pH7 6	18	18	11.10	15.51
coral polyp · control treatment	16	16	21.54	41.28
coral polyp · oil and dispersant treatment	16	16	16.86	41.04
coral polyp · oil treatment	16	16	14.69	25.63
coral polyp · dispersant treatment	16	16	11.68	19.28
Polyp	10	9	10.87	29.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.69
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.28
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.10
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.30
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.06
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.64
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.57
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.62
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.