Gene detail

Detailed information of OS493_013768-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1063003...1063536
NR annotation: KAJ7385736.1, Centrosomal protein cep57L1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006097 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06657 all species →	Cep57_MT_bd	Centrosome microtubule-binding domain of Cep57	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024957 all species →	Domain	Cep57 centrosome microtubule-binding domain	Interproscan
IPR051756 all species →	Family	Centrosomal microtubule-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19336 all species →	UNCHARACTERIZED DUF1167	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013768-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013768-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

14.0Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.09	10.76
polyp at pH7 6	18	18	6.58	13.97
coral polyp · control treatment	16	16	6.05	11.16
coral polyp · oil and dispersant treatment	16	16	4.10	7.42
coral polyp · oil treatment	16	16	6.70	11.78
coral polyp · dispersant treatment	16	15	3.11	8.31
Polyp	10	9	5.44	13.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.