Gene detail

Detailed information of OS493_013772-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1105123...1111323
NR annotation: KAJ7385740.1, Unconventional myosin-IXa [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7EZG2	Unconventional myosin-IXAa OS=Danio rerio OX=7955 GN=myo9aa PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001982 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046987 all species →	Family	Unconventional class IX myosin	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46184 all species →	UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013772-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013772-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

44.7Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.70	6.90
polyp at pH7 6	18	15	4.43	8.27
coral polyp · control treatment	16	16	13.35	24.59
coral polyp · oil and dispersant treatment	16	16	19.73	30.43
coral polyp · oil treatment	16	16	11.88	19.78
coral polyp · dispersant treatment	16	16	16.08	44.66
Polyp	10	9	3.12	6.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.18
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.