Gene detail

Detailed information of OS493_013779-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1160873...1169232
NR annotation: KAJ7385746.1, hypothetical protein OS493_013779 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31029	Alanine--glyoxylate aminotransferase OS=Callithrix jacchus OX=9483 GN=AGXT PE=2 SV=1
P41689	Alanine--glyoxylate aminotransferase OS=Felis catus OX=9685 GN=AGXT PE=2 SV=1
P21549	Alanine--glyoxylate aminotransferase OS=Homo sapiens OX=9606 GN=AGXT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR020578 all species →	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR024169 all species →	Family	Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21152 all species →	AMINOTRANSFERASE CLASS V	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004760 all species →	Molecular Function	L-serine-pyruvate transaminase activity	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008453 all species →	Molecular Function	alanine-glyoxylate transaminase activity	Interproscan
GO:0019265 all species →	Biological Process	glycine biosynthetic process, by transamination of glyoxylate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00830	AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase	EC:2.6.1.44 EC:2.6.1.45 EC:2.6.1.51	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013779-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

179.6Max TPM

43.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.26	44.15
polyp at pH7 6	18	18	30.72	48.85
coral polyp · control treatment	16	16	37.83	86.75
coral polyp · oil and dispersant treatment	16	16	63.46	119.50
coral polyp · oil treatment	16	16	34.46	48.06
coral polyp · dispersant treatment	16	16	78.99	179.55
Polyp	10	10	34.10	51.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.63
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.64
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.41
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.21
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.90
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.06
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.92
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.63
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.26
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	51.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	45.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	42.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	40.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	31.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	28.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.