Gene detail

Detailed information of OS493_013782-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1182395...1183683
NR annotation: KAJ7385749.1, protein-arginine omega-N symmetric methyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3U3W5	Protein arginine N-methyltransferase 9 OS=Mus musculus OX=10090 GN=Prmt9 PE=2 SV=2
Q6P2P2	Protein arginine N-methyltransferase 9 OS=Homo sapiens OX=9606 GN=PRMT9 PE=1 SV=1
A0JMU5	Protein arginine N-methyltransferase 9 OS=Xenopus laevis OX=8355 GN=prmt9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006615 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06325 all species →	PrmA	Ribosomal protein L11 methyltransferase (PrmA)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR025799 all species →	Family	Protein arginine N-methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11006 all species →	PROTEIN ARGININE N-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016274 all species →	Molecular Function	protein-arginine N-methyltransferase activity	Interproscan
GO:0018216 all species →	Biological Process	peptidyl-arginine methylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013782-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013782-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

26.6Max TPM

4.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.78	2.90
polyp at pH7 6	18	15	1.42	2.71
coral polyp · control treatment	16	16	7.57	26.59
coral polyp · oil and dispersant treatment	16	16	8.05	21.25
coral polyp · oil treatment	16	16	6.17	16.77
coral polyp · dispersant treatment	16	16	2.56	6.55
Polyp	10	9	1.07	3.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.25
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.