Gene detail

Detailed information of OS493_013786-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1224498...1228577
NR annotation: KAJ7385753.1, hypothetical protein OS493_013786 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94431	Hercynylcysteine sulfoxide lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=egt2 PE=3 SV=1
Q46C09	O-phospho-L-seryl-tRNA:Cys-tRNA synthase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) OX=269797 GN=Mbar_A1638 PE=3 SV=1
O30207	O-phospho-L-seryl-tRNA:Cys-tRNA synthase 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=AF_0028 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002316 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43092 all species →	L-CYSTEINE DESULFHYDRASE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_013786-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013786-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013786-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

15.9Max TPM

6.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.14	8.91
polyp at pH7 6	18	18	6.45	11.61
coral polyp · control treatment	16	16	8.11	15.91
coral polyp · oil and dispersant treatment	16	16	5.86	12.99
coral polyp · oil treatment	16	16	8.00	14.51
coral polyp · dispersant treatment	16	16	2.59	5.35
Polyp	10	9	5.65	9.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.73
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.95
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.79
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.22
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.