Gene detail

Detailed information of OS493_013817-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1546618...1555630
NR annotation: KAJ7385783.1, Unconventional myosin-IXa [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046987 all species →	Family	Unconventional class IX myosin	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46184 all species →	UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013817-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013817-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

106.3Max TPM

28.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.19	30.50
polyp at pH7 6	18	18	18.76	25.05
coral polyp · control treatment	16	16	34.27	61.96
coral polyp · oil and dispersant treatment	16	16	48.89	80.88
coral polyp · oil treatment	16	16	29.89	48.54
coral polyp · dispersant treatment	16	16	36.91	106.34
Polyp	10	10	12.40	18.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.50
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.78
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.19
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.35
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.39

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.