Gene detail

Detailed information of OS493_013838-T1 in Lophelia pertusa

Genomic Location: scaffold_38:1828849...1835554
NR annotation: KAJ7385804.1, hypothetical protein OS493_013838 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DRM0	Guided entry of tail-anchored proteins factor 1 OS=Danio rerio OX=7955 GN=get1 PE=2 SV=1
O00258	Guided entry of tail-anchored proteins factor 1 OS=Homo sapiens OX=9606 GN=GET1 PE=1 SV=2
Q5R6K7	Guided entry of tail-anchored proteins factor 1 OS=Pongo abelii OX=9601 GN=GET1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008335 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04420 all species →	CHD5	CHD5-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029012 all species →	Homologous_superfamily	Helix hairpin bin domain superfamily	Interproscan
IPR028945 all species →	Family	Get1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42650 all species →	TAIL-ANCHORED PROTEIN INSERTION RECEPTOR WRB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043495 all species →	Molecular Function	protein-membrane adaptor activity	Interproscan
GO:0043529 all species →	Cellular Component	GET complex	Interproscan
GO:0071816 all species →	Biological Process	tail-anchored membrane protein insertion into ER membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22384	GET1, WRB; tail-anchored protein insertion receptor	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013838-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

27.4Max TPM

7.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.04	13.82
polyp at pH7 6	18	16	6.16	10.20
coral polyp · control treatment	16	16	9.26	15.15
coral polyp · oil and dispersant treatment	16	16	8.89	27.44
coral polyp · oil treatment	16	16	10.18	17.61
coral polyp · dispersant treatment	16	16	4.86	9.84
Polyp	10	9	8.43	11.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.82
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.15
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.81
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.