Gene detail

Detailed information of OS493_013981-T1 in Lophelia pertusa

Genomic Location: scaffold_39:367719...377051
NR annotation: KAJ7379586.1, RNA polymerase II subunit A C-terminal domain phosphatase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJQ7	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus OX=9031 GN=SSU72 PE=2 SV=1
Q6PC19	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio OX=7955 GN=ssu72 PE=2 SV=1
Q17QI2	RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus OX=9913 GN=SSU72 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006544 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04722 all species →	Ssu72	Ssu72-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006811 all species →	Family	RNA polymerase II subunit A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20383 all species →	RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006397 all species →	Biological Process	mRNA processing	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006369 all species →	Biological Process	termination of RNA polymerase II transcription	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0008420 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0070940 all species →	Biological Process	obsolete dephosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15544	SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72	EC:3.1.3.16	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_013981-T1 global co-expression network