Gene detail

Detailed information of OS493_013984-T1 in Lophelia pertusa

Genomic Location: scaffold_39:423884...431974
NR annotation: KAJ7379589.1, Dipeptidyl peptidase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHL4	Dipeptidyl peptidase 2 OS=Homo sapiens OX=9606 GN=DPP7 PE=1 SV=3
Q9ET22	Dipeptidyl peptidase 2 OS=Mus musculus OX=10090 GN=Dpp7 PE=1 SV=2
Q9EPB1	Dipeptidyl peptidase 2 OS=Rattus norvegicus OX=10116 GN=Dpp7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001432 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05577 all species →	Peptidase_S28	Serine carboxypeptidase S28	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR008758 all species →	Family	Peptidase S28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11010 all species →	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008239 all species →	Molecular Function	dipeptidyl-peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0070008 all species →	Molecular Function	serine-type exopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013984-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013984-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

59.4Max TPM

28.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.04	45.95
polyp at pH7 6	18	18	25.56	29.65
coral polyp · control treatment	16	16	32.46	57.07
coral polyp · oil and dispersant treatment	16	16	34.02	44.56
coral polyp · oil treatment	16	16	32.73	59.43
coral polyp · dispersant treatment	16	16	23.68	37.76
Polyp	10	10	28.18	39.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.67
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.07
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.85
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.82
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.52
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.91
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.48
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	39.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	39.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	23.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.55

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.