Gene detail

Detailed information of OS493_013989-T1 in Lophelia pertusa

Genomic Location: scaffold_39:508863...514277
NR annotation: KAJ7379594.1, hypothetical protein OS493_013989 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O22943	Probable glycosyltransferase STELLO1 OS=Arabidopsis thaliana OX=3702 GN=STL1 PE=1 SV=1
Q9SCN0	Probable glycosyltransferase STELLO2 OS=Arabidopsis thaliana OX=3702 GN=STL2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001781 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03385 all species →	STELLO	STELLO glycosyltransferases	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005049 all species →	Family	STELLO-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31362 all species →	GLYCOSYLTRANSFERASE STELLO1-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_013989-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013989-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013989-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

11.7Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.84	4.20
polyp at pH7 6	18	17	1.72	4.49
coral polyp · control treatment	16	16	3.21	11.73
coral polyp · oil and dispersant treatment	16	16	2.57	6.54
coral polyp · oil treatment	16	16	2.62	7.08
coral polyp · dispersant treatment	16	15	1.97	4.02
Polyp	10	8	0.91	2.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.75
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.96
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.47
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.23
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.07
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.