Gene detail

Detailed information of OS493_013993-T1 in Lophelia pertusa

Genomic Location: scaffold_39:535791...540836
NR annotation: KAJ7379598.1, hypothetical protein OS493_013993 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5PQ76	Uncharacterized protein C1orf50 homolog OS=Xenopus laevis OX=8355 PE=2 SV=1
Q9BV19	Uncharacterized protein C1orf50 OS=Homo sapiens OX=9606 GN=C1orf50 PE=1 SV=2
Q5EBG8	Uncharacterized protein C1orf50 homolog OS=Mus musculus OX=10090 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007740 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10504 all species →	DUF2452	Protein of unknown function (DUF2452)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019534 all species →	Family	Protein of unknown function DUF2452	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14553 all species →	UNCHARACTERIZED PROTEIN C1ORF50	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_013993-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_013993-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_013993-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

96.0Max TPM

42.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.07	45.25
polyp at pH7 6	18	18	30.77	48.22
coral polyp · control treatment	16	16	48.51	95.99
coral polyp · oil and dispersant treatment	16	16	57.85	81.58
coral polyp · oil treatment	16	16	36.41	49.74
coral polyp · dispersant treatment	16	16	54.15	93.83
Polyp	10	10	40.93	79.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.39
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.09
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.67
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.32
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	93.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.65
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.07
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	79.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	67.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	54.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	45.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	23.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.