Detailed information of OS493_014005-T1 in Lophelia pertusa

Genomic Location: scaffold_39:712034...719669
NR annotation: KAJ7379610.1, meiotic chromosome condensation [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A1I9LM04Condensin-1 complex subunit CAP-D2 OS=Arabidopsis thaliana OX=3702 GN=CAP-D2 PE=2 SV=1
Q15021Condensin complex subunit 1 OS=Homo sapiens OX=9606 GN=NCAPD2 PE=1 SV=3
Q9YHY6Condensin complex subunit 1 OS=Xenopus laevis OX=8355 GN=ncapd2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004260 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12717
all species →		Cnd1non-SMC mitotic condensation complex subunit 1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032682
all species →		DomainCondensin complex subunit 1, C-terminalInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR026971
all species →		FamilyCondensin subunit 1/Condensin-2 complex subunit D3Interproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14222
all species →		CONDENSINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000779
all species →		Cellular Componentcondensed chromosome, centromeric regionInterproscan
GO:0000799
all species →		Cellular Componentcondensin complexInterproscan
GO:0007076
all species →		Biological Processmitotic chromosome condensationInterproscan
GO:0010032
all species →		Biological Processmeiotic chromosome condensationInterproscan
GO:0042393
all species →		Molecular Functionhistone bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014005-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014005-T1 global co-expression network
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