Gene detail

Detailed information of OS493_014090-T1 in Lophelia pertusa

Genomic Location: scaffold_39:1665862...1668308
NR annotation: KAJ7379686.1, Inactive C-alpha-formylglycine-proteinrating enzyme 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RCR5	Inactive C-alpha-formylglycine-generating enzyme 2 OS=Pongo abelii OX=9601 GN=SUMF2 PE=2 SV=1
Q8NBJ7	Inactive C-alpha-formylglycine-generating enzyme 2 OS=Homo sapiens OX=9606 GN=SUMF2 PE=1 SV=2
Q58CP2	Inactive C-alpha-formylglycine-generating enzyme 2 OS=Bos taurus OX=9913 GN=SUMF2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002361 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03781 all species →	FGE-sulfatase	Sulfatase-modifying factor enzyme 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042095 all species →	Homologous_superfamily	Sulfatase-modifying factor enzyme superfamily	Interproscan
IPR051043 all species →	Family	Sulfatase Modifying Factor and Kinase	Interproscan
IPR005532 all species →	Domain	Sulfatase-modifying factor enzyme	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23150 all species →	SULFATASE MODIFYING FACTOR 1, 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014090-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014090-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

10.0Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.47	6.90
polyp at pH7 6	18	17	4.18	7.71
coral polyp · control treatment	16	16	5.35	9.98
coral polyp · oil and dispersant treatment	16	15	3.44	6.04
coral polyp · oil treatment	16	16	4.41	6.63
coral polyp · dispersant treatment	16	15	3.67	6.42
Polyp	10	9	2.00	5.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.69
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.26
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.