Gene detail

Detailed information of OS493_014109-T1 in Lophelia pertusa

Genomic Location: scaffold_39:1877235...1878140
NR annotation: KAJ7379704.1, amine oxidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JZQ5	Diamine oxidase [copper-containing] OS=Mus musculus OX=10090 GN=Aoc1 PE=2 SV=1
P36633	Diamine oxidase [copper-containing] OS=Rattus norvegicus OX=10116 GN=Aoc1 PE=2 SV=1
P19801	Diamine oxidase [copper-containing] OS=Homo sapiens OX=9606 GN=AOC1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000872 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01179 all species →	Cu_amine_oxid	Copper amine oxidase, enzyme domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049947 all species →	Conserved_site	Copper amine oxidase, copper-binding site	Interproscan
IPR000269 all species →	Family	Copper amine oxidase	Interproscan
IPR036460 all species →	Homologous_superfamily	Copper amine oxidase, catalytic domain superfamily	Interproscan
IPR015798 all species →	Domain	Copper amine oxidase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10638 all species →	COPPER AMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005507 all species →	Molecular Function	copper ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008131 all species →	Molecular Function	primary methylamine oxidase activity	Interproscan
GO:0009308 all species →	Biological Process	amine metabolic process	Interproscan
GO:0048038 all species →	Molecular Function	quinone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014109-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014109-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

90TPM > 0

7Conditions

13.5Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	0.71	1.86
polyp at pH7 6	18	12	0.48	1.51
coral polyp · control treatment	16	14	2.07	8.54
coral polyp · oil and dispersant treatment	16	15	1.68	9.55
coral polyp · oil treatment	16	15	2.01	8.38
coral polyp · dispersant treatment	16	14	1.48	9.15
Polyp	10	7	2.45	13.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.25
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.54
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.24
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.