Gene detail

Detailed information of OS493_014120-T1 in Lophelia pertusa

Genomic Location: scaffold_39:2011978...2013938
NR annotation: KAJ7379714.1, Protein deglycase DJ-1zDJ-1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P90994	Glutathione-independent glyoxalase DJR-1.1 OS=Caenorhabditis elegans OX=6239 GN=djr-1.1 PE=1 SV=1
Q5XJ36	Parkinson disease protein 7 homolog OS=Danio rerio OX=7955 GN=park7 PE=2 SV=1
Q8UW59	Protein/nucleic acid deglycase DJ-1 OS=Gallus gallus OX=9031 GN=PARK7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004094 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01965 all species →	DJ-1_PfpI	DJ-1/PfpI family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR002818 all species →	Domain	DJ-1/PfpI	Interproscan
IPR006287 all species →	Family	Protein/nucleic acid deglycase DJ-1	Interproscan
IPR050325 all species →	Family	Protein/nucleic acid deglycase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48094 all species →	PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0046295 all species →	Biological Process	glycolate biosynthetic process	Interproscan
GO:1901215 all species →	Biological Process	obsolete negative regulation of neuron death	Interproscan
GO:1903189 all species →	Biological Process	glyoxal metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05687	PARK7; protein DJ-1	EC:3.5.1.124	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014120-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

117.9Max TPM

43.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	48.68	60.12
polyp at pH7 6	18	18	46.39	72.47
coral polyp · control treatment	16	16	53.05	117.94
coral polyp · oil and dispersant treatment	16	16	38.25	78.91
coral polyp · oil treatment	16	16	52.78	99.34
coral polyp · dispersant treatment	16	16	27.66	68.47
Polyp	10	9	26.82	57.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.91
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.65
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.43
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.34
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.41
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.16
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.85
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	57.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	52.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	41.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	34.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.