Gene detail

Detailed information of OS493_014161-T1 in Lophelia pertusa

Genomic Location: scaffold_39:2647600...2649593
NR annotation: KAJ7379754.1, hypothetical protein OS493_014161 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DRI0	Insulin-like peptide 02 OS=Exaiptasia diaphana OX=2652724 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000635 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00049 all species →	Insulin	Insulin/IGF/Relaxin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016179 all species →	Domain	Insulin-like	Interproscan
IPR022353 all species →	Conserved_site	Insulin, conserved site	Interproscan
IPR036438 all species →	Homologous_superfamily	Insulin-like superfamily	Interproscan
IPR022352 all species →	Family	Insulin family	Interproscan

PANTHER

No PANTHER signature was detected for OS493_014161-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005179 all species →	Molecular Function	hormone activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014161-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014161-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

57.4Max TPM

14.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.92	20.28
polyp at pH7 6	18	17	10.94	31.29
coral polyp · control treatment	16	16	11.78	23.24
coral polyp · oil and dispersant treatment	16	16	12.33	18.86
coral polyp · oil treatment	16	16	14.86	31.69
coral polyp · dispersant treatment	16	16	13.41	27.61
Polyp	10	10	32.41	57.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.51
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.99
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.89
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.98
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.76
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	57.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	47.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	39.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	33.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	27.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.